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The crystal structure of the gene lin2722 products from Listeria innocua
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 298 10% Glycerol, 20.5% PEK4000, 0.065M tris_Na Citrate, 0.1M NH4 acetate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.84 56.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.211 α = 90 b = 63.211 β = 90 c = 163.075 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9796 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.94 99.35 0.108 31.68 17 29987 29792 2 2 15.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.847 95.29 0.58 2.1 10.7 2270
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 49.94 29987 29792 1591 99.35 0.16973 0.16793 0.1796 0.20373 0.2127 RANDOM 14.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.14 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.294 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 12.282 r_dihedral_angle_1_deg 6.056 r_scangle_it 4.769 r_scbond_it 3.558 r_mcbond_it 1.721 r_mcangle_it 1.693 r_angle_refined_deg 1.656 r_angle_other_deg 1.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.294 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 12.282 r_dihedral_angle_1_deg 6.056 r_scangle_it 4.769 r_scbond_it 3.558 r_mcbond_it 1.721 r_mcangle_it 1.693 r_angle_refined_deg 1.656 r_angle_other_deg 1.008 r_symmetry_vdw_refined 0.326 r_mcbond_other 0.317 r_symmetry_hbond_refined 0.299 r_symmetry_vdw_other 0.298 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.205 r_nbd_other 0.2 r_nbtor_refined 0.18 r_chiral_restr 0.11 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1982 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing