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Crystal structure of Geobacter sulfurreducens OmcF with N-terminal Strep-tag II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 1.4-1.8M ammonium sulfate, 2% PEG400, 100mM HEPES/NaOH, pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.475 α = 90 b = 40.125 β = 90 c = 42.085 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2007-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 33.08 99.7 0.105 23.5 21.78 8066 2 2 21.934
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.96 98.5 0.4952 0.4952 6.06 16.04 394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.86 33.08 2 2 7684 7669 371 99.68 0.17236 0.17045 0.17 0.20987 0.2096 RANDOM 21.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 -0.5 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 23.24 r_dihedral_angle_1_deg 21.004 r_dihedral_angle_3_deg 13.139 r_scangle_it 3.389 r_scbond_it 2.283 r_angle_refined_deg 1.776 r_mcangle_it 1.42 r_mcbond_it 0.983 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 23.24 r_dihedral_angle_1_deg 21.004 r_dihedral_angle_3_deg 13.139 r_scangle_it 3.389 r_scbond_it 2.283 r_angle_refined_deg 1.776 r_mcangle_it 1.42 r_mcbond_it 0.983 r_nbtor_refined 0.304 r_nbd_refined 0.264 r_xyhbond_nbd_refined 0.228 r_symmetry_vdw_refined 0.228 r_symmetry_hbond_refined 0.195 r_chiral_restr 0.133 r_bond_refined_d 0.018 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 739 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection DENZO data reduction SCALEPACK data scaling SHARP phasing