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Crystal structure of methyltransferase involved in cell division from thermoplasma volcanicum gss1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 100MM HEPES,PH 7.5, 20% PEG3350, 10% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 298K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 1.99 38.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.62 α = 90 b = 50.053 β = 108.08 c = 56.457 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2007-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.7 0.062 5.4 3.8 30605 -5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 98.6 0.726 1.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 20 28898 1538 99.67 0.1671 0.16566 0.1641 0.19456 0.1934 RANDOM 20.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.05 0.22 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.225 r_dihedral_angle_4_deg 17.248 r_dihedral_angle_3_deg 13.966 r_dihedral_angle_1_deg 11.629 r_scangle_it 7.454 r_scbond_it 4.901 r_mcangle_it 3.669 r_mcbond_it 2.742 r_angle_refined_deg 1.484 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.225 r_dihedral_angle_4_deg 17.248 r_dihedral_angle_3_deg 13.966 r_dihedral_angle_1_deg 11.629 r_scangle_it 7.454 r_scbond_it 4.901 r_mcangle_it 3.669 r_mcbond_it 2.742 r_angle_refined_deg 1.484 r_nbtor_refined 0.306 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.139 r_symmetry_vdw_refined 0.133 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1489 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 27
Software Software Software Name Purpose SHELXD phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling