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Complex of ARL2 and BART, Crystal Form 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KSG PDB ENTRY 1KSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 277 0.1M bicine, 10% PEG 6000, 20mM hexammine cobalt (III) chloride, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.93 36.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.827 α = 90 b = 44.081 β = 111.46 c = 66.495 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 2007-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.5596 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 97.7 0.065 0.065 27.9 6.6 15074 14727 1 1 36.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 83.7 0.216 0.216 4 4.5 1496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KSG 2.25 35.9 15074 13975 742 97.69 0.23168 0.23168 0.23011 0.2298 0.26123 0.2245 RANDOM 37.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -1.37 -0.62 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.785 r_dihedral_angle_4_deg 20.633 r_dihedral_angle_3_deg 19.615 r_dihedral_angle_1_deg 4.776 r_scangle_it 2.799 r_mcangle_it 1.919 r_scbond_it 1.799 r_rigid_bond_restr 1.379 r_angle_refined_deg 1.327 r_mcbond_it 1.043
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.785 r_dihedral_angle_4_deg 20.633 r_dihedral_angle_3_deg 19.615 r_dihedral_angle_1_deg 4.776 r_scangle_it 2.799 r_mcangle_it 1.919 r_scbond_it 1.799 r_rigid_bond_restr 1.379 r_angle_refined_deg 1.327 r_mcbond_it 1.043 r_sphericity_bonded 0.606 r_nbtor_refined 0.314 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.207 r_chiral_restr 0.189 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.136 r_sphericity_free 0.096 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2483 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing