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Thermolysin by LB nanotemplate method before high X-Ray dose on ESRF ID14-2 beamline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 DMSO, Ammonium sulfate, MES, hanging drop, 293K, pH6.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.31 46.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.535 α = 90 b = 92.535 β = 90 c = 128.628 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 Toroidal mirror 2007-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.198 80.137 84 0.225 0.225 3.1 5.4 89255
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.18 1.25 30.7 0.1 1.3 4632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.2 68.04 60310 3006 59.69 0.241 0.24 0.2376 0.267 0.266 RANDOM 15.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.36 -0.71 1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.355 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 12.682 r_dihedral_angle_1_deg 5.341 r_scangle_it 2.548 r_scbond_it 1.718 r_angle_refined_deg 1.173 r_mcangle_it 0.978 r_mcbond_it 0.582 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.355 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 12.682 r_dihedral_angle_1_deg 5.341 r_scangle_it 2.548 r_scbond_it 1.718 r_angle_refined_deg 1.173 r_mcangle_it 0.978 r_mcbond_it 0.582 r_nbtor_refined 0.311 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.21 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.106 r_chiral_restr 0.082 r_metal_ion_refined 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2479 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 22
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction