☰ Navigation Tabs
SPO1766 protein of unknown function from Silicibacter pomeroyi.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 277 2.5 M sodium chloride, 0.1 M sodium/potassium phosphate buffer, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.56 51.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.892 α = 90 b = 59.892 β = 90 c = 99.868 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 39 100 0.106 10.2 10.8 14100 14100 39.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.97 100 0.82 3.01 11.1 680
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.94 39 14043 14043 698 99.91 0.174 0.174 0.172 0.1765 0.213 0.2142 RANDOM 34.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.73 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.359 r_dihedral_angle_4_deg 24.457 r_dihedral_angle_3_deg 18.655 r_dihedral_angle_1_deg 6.134 r_scangle_it 3.77 r_scbond_it 2.317 r_mcangle_it 1.572 r_angle_refined_deg 1.523 r_angle_other_deg 0.96 r_mcbond_it 0.892
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.359 r_dihedral_angle_4_deg 24.457 r_dihedral_angle_3_deg 18.655 r_dihedral_angle_1_deg 6.134 r_scangle_it 3.77 r_scbond_it 2.317 r_mcangle_it 1.572 r_angle_refined_deg 1.523 r_angle_other_deg 0.96 r_mcbond_it 0.892 r_symmetry_vdw_other 0.317 r_mcbond_other 0.237 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.209 r_nbd_other 0.209 r_nbtor_refined 0.177 r_metal_ion_refined 0.122 r_symmetry_vdw_refined 0.115 r_symmetry_hbond_refined 0.11 r_nbtor_other 0.094 r_chiral_restr 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1166 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing