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The N-terminal domain of Ribosomal-protein-alanine acetyltransferase from Clostridium acetobutylicum ATCC 824
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 0.2 M NaCl, 0.1 M citrate ph 5.5 40% propanediol, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.71 54.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.619 α = 90 b = 59.619 β = 90 c = 196.448 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 97 0.075 21.1 4.8 39476 38325 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 99 0.32 4.2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 30 2 20939 19861 1078 97.01 0.19967 0.19967 0.19726 0.24607 0.289 RANDOM 22.555
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 1.28 -2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.594 r_dihedral_angle_4_deg 20.828 r_dihedral_angle_3_deg 14.311 r_dihedral_angle_1_deg 9.566 r_scangle_it 2.758 r_scbond_it 2.031 r_angle_refined_deg 1.772 r_mcangle_it 1.316 r_mcbond_it 1.074 r_angle_other_deg 0.942
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.594 r_dihedral_angle_4_deg 20.828 r_dihedral_angle_3_deg 14.311 r_dihedral_angle_1_deg 9.566 r_scangle_it 2.758 r_scbond_it 2.031 r_angle_refined_deg 1.772 r_mcangle_it 1.316 r_mcbond_it 1.074 r_angle_other_deg 0.942 r_symmetry_hbond_refined 0.31 r_symmetry_vdw_refined 0.248 r_mcbond_other 0.248 r_nbd_refined 0.218 r_symmetry_vdw_other 0.213 r_nbd_other 0.199 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.119 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2153 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing Coot model building