Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
IMOD was used for tomographic reconstruction. Programs developed in-house were used for alignment and classification of individual tomographic volumes ...
IMOD was used for tomographic reconstruction. Programs developed in-house were used for alignment and classification of individual tomographic volumes. The final map is the average of ~4000 individual spikes.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C3
Map-Model Fitting and Refinement
Id
1 (1GC1)
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
correlation coefficient
Overall B Value
Fitting Procedure
Details
METHOD--Automatic. The coordinates for this entry and the two related entries
3DNL and 3DNN are based on fitting 1GC1 coordinates for the gp120 monom ...
METHOD--Automatic. The coordinates for this entry and the two related entries
3DNL and 3DNN are based on fitting 1GC1 coordinates for the gp120 monomer
deposited previously by Kwong et al in 1998 into the density map for the trimer
derived by electron microscopy. Therefore, authors did not deposit new
structure factors, and, any features such as unusual torsion angles are the
same as in the 1GC1 coordinates. REFINEMENT PROTOCOL--rigid body