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Crystal structure of a putative general stress family protein (xcc2264) from xanthomonas campestris pv. campestris at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 1.2000M K2HPO4, 0.8000M Na2HPO4, 0.1M Acetate pH 4.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.26 45.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.32 α = 90 b = 105.32 β = 90 c = 68.34 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97862,0.91837,0.97939 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28.665 99.4 0.048 17.56 19745 -3 52.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 96 0.642 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 28.665 19719 1006 99.7 0.213 0.21 0.2137 0.264 0.2611 RANDOM 56.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 0.54 1.08 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.754 r_dihedral_angle_3_deg 13.173 r_dihedral_angle_4_deg 10.207 r_scangle_it 4.44 r_dihedral_angle_1_deg 3.749 r_scbond_it 3.073 r_mcangle_it 1.763 r_angle_refined_deg 1.671 r_angle_other_deg 1.281 r_mcbond_it 1.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.754 r_dihedral_angle_3_deg 13.173 r_dihedral_angle_4_deg 10.207 r_scangle_it 4.44 r_dihedral_angle_1_deg 3.749 r_scbond_it 3.073 r_mcangle_it 1.763 r_angle_refined_deg 1.671 r_angle_other_deg 1.281 r_mcbond_it 1.125 r_mcbond_other 0.235 r_nbd_refined 0.162 r_symmetry_vdw_refined 0.161 r_nbtor_refined 0.15 r_nbd_other 0.138 r_symmetry_vdw_other 0.124 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.096 r_symmetry_hbond_refined 0.077 r_nbtor_other 0.07 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3219 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing