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Crystal structure of human haspin in complex with AMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VUW PDB entry 2VUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.2M Li2SO4, 0.1M HEPES pH 7.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.19 43.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.315 α = 90 b = 49.729 β = 90 c = 98.009 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2008-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 41.169 99.1 0.087 0.087 9.3 2.9 31316 30974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 97.6 0.512 0.512 2 2.8 4362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2VUW 1.85 41.169 30934 30934 1558 98.78 0.167 0.167 0.164 0.1699 0.216 0.2196 RANDOM 22.131
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 0.82 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.152 r_dihedral_angle_3_deg 12.554 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 6.543 r_scangle_it 3.673 r_scbond_it 2.275 r_angle_refined_deg 1.545 r_mcangle_it 1.459 r_angle_other_deg 0.975 r_mcbond_it 0.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.152 r_dihedral_angle_3_deg 12.554 r_dihedral_angle_4_deg 12.297 r_dihedral_angle_1_deg 6.543 r_scangle_it 3.673 r_scbond_it 2.275 r_angle_refined_deg 1.545 r_mcangle_it 1.459 r_angle_other_deg 0.975 r_mcbond_it 0.839 r_mcbond_other 0.233 r_chiral_restr 0.093 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2629 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms 32
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction