☰ Navigation Tabs
Crystal structure of Putative Oxygenase (YP_001051978.1) from SHEWANELLA BALTICA OS155 at 2.26 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 1.0M Imidazole, pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.98 58.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.452 α = 90 b = 153.452 β = 90 c = 84.851 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT COLLIMATING MIRROR, TOROID FOCUSING MIRROR 2008-03-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97932,0.97918 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 28.855 100 0.119 0.119 5.8 7.6 47944 39.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.32 100 0.871 0.871 0.9 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.26 28.855 47880 2424 99.9 0.198 0.196 0.2038 0.232 0.2376 RANDOM 45.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 1.11 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.04 r_dihedral_angle_4_deg 14.722 r_dihedral_angle_3_deg 11.809 r_scangle_it 5.227 r_dihedral_angle_1_deg 3.945 r_scbond_it 3.898 r_mcangle_it 2.054 r_angle_refined_deg 1.643 r_angle_other_deg 1.339 r_mcbond_it 1.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.04 r_dihedral_angle_4_deg 14.722 r_dihedral_angle_3_deg 11.809 r_scangle_it 5.227 r_dihedral_angle_1_deg 3.945 r_scbond_it 3.898 r_mcangle_it 2.054 r_angle_refined_deg 1.643 r_angle_other_deg 1.339 r_mcbond_it 1.295 r_mcbond_other 0.317 r_symmetry_vdw_other 0.278 r_nbd_refined 0.181 r_nbtor_refined 0.154 r_nbd_other 0.149 r_symmetry_vdw_refined 0.129 r_symmetry_hbond_refined 0.118 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.094 r_nbtor_other 0.073 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5198 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing