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Catalytic cycle of human glutathione reductase near 1 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GRS PDB ENTRY 3GRS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 298 3% ammonium sulfate, 0.1 M potassium phosphate and 0.1% beta-octyl glucoside, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.73 54.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.532 α = 90 b = 63.362 β = 121.54 c = 84.619 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS IV 2004-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20.06 46862
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 3GRS 1.8 20.06 42115 42115 4747 93.5 0.145 0.141 0.1421 0.186 0.1875 RANDOM 13.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.05 -0.01 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.55 r_scangle_it 18.724 r_dihedral_angle_4_deg 15.756 r_dihedral_angle_3_deg 14.24 r_scbond_it 13.733 r_mcangle_it 6.961 r_mcbond_it 5.89 r_dihedral_angle_1_deg 5.646 r_angle_refined_deg 1.662 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.55 r_scangle_it 18.724 r_dihedral_angle_4_deg 15.756 r_dihedral_angle_3_deg 14.24 r_scbond_it 13.733 r_mcangle_it 6.961 r_mcbond_it 5.89 r_dihedral_angle_1_deg 5.646 r_angle_refined_deg 1.662 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.257 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3499 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling CNS phasing