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CRYSTAL STRUCTURE OF PANTOTHENATE KINASE FROM LEGIONELLA PNEUMOPHILA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 100MM MES PH 6.5, 28% PEG MME 5K, 250MM AMMONIUM PHOSPHATE, VAPOR DIFFUSION, TEMPERATURE 294K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.48 50.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.394 α = 90 b = 134.571 β = 93.24 c = 134.404 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2007-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 97.5 0.125 0.125 3 1.9 140651 62.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 94.9 0.833 0.833 0.4 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 20 124742 3908 97.5 0.261 0.259 0.313 0.2813 RANDOM 63.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.48 0.17 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.654 r_dihedral_angle_3_deg 19.33 r_dihedral_angle_4_deg 16.158 r_scangle_it 13.94 r_scbond_it 11.242 r_mcangle_it 8.698 r_mcbond_it 6.433 r_dihedral_angle_1_deg 5.843 r_angle_refined_deg 1.245 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.654 r_dihedral_angle_3_deg 19.33 r_dihedral_angle_4_deg 16.158 r_scangle_it 13.94 r_scbond_it 11.242 r_mcangle_it 8.698 r_mcbond_it 6.433 r_dihedral_angle_1_deg 5.843 r_angle_refined_deg 1.245 r_nbtor_refined 0.297 r_symmetry_hbond_refined 0.215 r_xyhbond_nbd_refined 0.169 r_nbd_refined 0.13 r_symmetry_vdw_refined 0.092 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23182 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 66
Software Software Software Name Purpose SHELXD phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling