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Domain swapping of Staphylococcus Aureus thioredoxin W28A mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 30%(v/v) Polyethylene glycol 400, 0.1M sodium acetate pH 4.6, 0.1M cadmium chloride, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.81 56.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.703 α = 90 b = 84.451 β = 90 c = 34.699 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MAR CCD 165 mm 2007-04-01 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8152 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 61.2 0.112 0.19 11.5 22762
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.85 61.2 21599 1163 98.86 0.193 0.192 0.22 0.2527 RANDOM 32.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.24 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.937 r_dihedral_angle_1_deg 20.09 r_dihedral_angle_3_deg 13.764 r_scangle_it 4.081 r_scbond_it 2.606 r_angle_refined_deg 1.648 r_mcangle_it 1.446 r_mcbond_it 1.078 r_symmetry_metal_ion_refined 0.571 r_metal_ion_refined 0.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.937 r_dihedral_angle_1_deg 20.09 r_dihedral_angle_3_deg 13.764 r_scangle_it 4.081 r_scbond_it 2.606 r_angle_refined_deg 1.648 r_mcangle_it 1.446 r_mcbond_it 1.078 r_symmetry_metal_ion_refined 0.571 r_metal_ion_refined 0.353 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.274 r_xyhbond_nbd_refined 0.27 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.223 r_chiral_restr 0.118 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1539 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction SCALEPACK data scaling PHASER phasing