☰ Navigation Tabs
Crystal structure of a dinb-like protein (bce_4655) from bacillus cereus atcc 10987 at 2.01 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.57 293 0.2M magnesium chloride, 30.5% polyethylene glycol 4000, 0.1M TRIS pH 8.57, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 43.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.12 α = 90 b = 84.19 β = 90 c = 50.32 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-04-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97916,0.97860 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.009 28.63 95.6 0.034 13.57 3.93 11180 -3 35.693
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 77.6 0.413 2.63
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.009 28.63 11168 534 97.98 0.231 0.229 0.226 0.266 0.2537 RANDOM 33.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.4 5.29 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.434 r_dihedral_angle_4_deg 23.366 r_dihedral_angle_3_deg 13.892 r_dihedral_angle_1_deg 5.035 r_scangle_it 2.259 r_scbond_it 1.641 r_angle_refined_deg 1.273 r_mcangle_it 1.147 r_angle_other_deg 0.924 r_mcbond_it 0.764
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.434 r_dihedral_angle_4_deg 23.366 r_dihedral_angle_3_deg 13.892 r_dihedral_angle_1_deg 5.035 r_scangle_it 2.259 r_scbond_it 1.641 r_angle_refined_deg 1.273 r_mcangle_it 1.147 r_angle_other_deg 0.924 r_mcbond_it 0.764 r_nbd_refined 0.221 r_nbtor_refined 0.181 r_nbd_other 0.17 r_mcbond_other 0.154 r_xyhbond_nbd_refined 0.15 r_symmetry_vdw_refined 0.147 r_symmetry_vdw_other 0.121 r_nbtor_other 0.088 r_chiral_restr 0.076 r_symmetry_hbond_refined 0.076 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1146 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing