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Crystal structure of F87A/T268A mutant of CYP BM3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BU7 PDB entry 1BU7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 12% PEG 8000, 100mM Tris-HCl pH 8.5, 200mM MgCl2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.57 52.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.934 α = 90 b = 146.625 β = 97.36 c = 63.515 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Mirrors 2007-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 89.8 0.081 15.1 3.9 69973 69973 29.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 48.2 0.637 1.4 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1BU7 1.95 40.36 66414 66413 3507 89.76 0.17914 0.17697 0.1876 0.22043 0.228 RANDOM 32.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.25 -0.66 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.229 r_dihedral_angle_4_deg 16.612 r_dihedral_angle_3_deg 15.598 r_dihedral_angle_1_deg 6.054 r_scangle_it 3.511 r_scbond_it 2.174 r_angle_refined_deg 1.455 r_mcangle_it 1.425 r_angle_other_deg 0.951 r_mcbond_it 0.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.229 r_dihedral_angle_4_deg 16.612 r_dihedral_angle_3_deg 15.598 r_dihedral_angle_1_deg 6.054 r_scangle_it 3.511 r_scbond_it 2.174 r_angle_refined_deg 1.455 r_mcangle_it 1.425 r_angle_other_deg 0.951 r_mcbond_it 0.781 r_mcbond_other 0.182 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7139 Nucleic Acid Atoms Solvent Atoms 508 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing