☰ Navigation Tabs
Crystal Structure of Drosophila Thioredoxin Reductase, C-terminal 8-residue truncation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 303 0.1 M Succinate, 1.0 M Li2SO4, 0.6 M (NH4)2SO4, pH 5.5, vapor diffusion, hanging drop, temperature 303K
Crystal Properties Matthews coefficient Solvent content 2.94 58.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.755 α = 90 b = 135.755 β = 90 c = 132.527 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2008-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.745 32 100 0.085 11.6 8 125246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.745 1.81 100 0.54 4.02 7.7 12401
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.745 29.77 125158 12558 99.85 0.203 0.2 0.2231 0.224 0.2426 RANDOM 6.957
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.111 r_dihedral_angle_4_deg 16.082 r_dihedral_angle_3_deg 13.851 r_dihedral_angle_1_deg 5.894 r_scangle_it 2.701 r_scbond_it 1.774 r_angle_refined_deg 1.484 r_mcangle_it 0.975 r_mcbond_it 0.598 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.111 r_dihedral_angle_4_deg 16.082 r_dihedral_angle_3_deg 13.851 r_dihedral_angle_1_deg 5.894 r_scangle_it 2.701 r_scbond_it 1.774 r_angle_refined_deg 1.484 r_mcangle_it 0.975 r_mcbond_it 0.598 r_nbtor_refined 0.306 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_refined 0.189 r_chiral_restr 0.116 r_xyhbond_nbd_refined 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7288 Nucleic Acid Atoms Solvent Atoms 644 Heterogen Atoms 126
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Locally data collection