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The crystal structure of the zinc inhibited form of teicoplanin deacetylase Orf2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.16 43.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.309 α = 90 b = 64.324 β = 98.9 c = 49.875 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.9704 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 16079
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 25 16079 858 98.67 0.19972 0.19755 0.1974 0.24052 0.2422 RANDOM 37.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -1.16 -1.35 2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.544 r_dihedral_angle_4_deg 17.189 r_dihedral_angle_3_deg 13.301 r_dihedral_angle_1_deg 5.241 r_scangle_it 2.951 r_scbond_it 2.193 r_mcangle_it 1.443 r_angle_refined_deg 1.145 r_mcbond_it 0.816 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.544 r_dihedral_angle_4_deg 17.189 r_dihedral_angle_3_deg 13.301 r_dihedral_angle_1_deg 5.241 r_scangle_it 2.951 r_scbond_it 2.193 r_mcangle_it 1.443 r_angle_refined_deg 1.145 r_mcbond_it 0.816 r_nbtor_refined 0.301 r_symmetry_hbond_refined 0.274 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.167 r_metal_ion_refined 0.112 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2074 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement