☰ Navigation Tabs
The crystal structure of antimicrobial reagent A40926 pseudoaglycone deacetylase Dbv21
Crystallization Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.94 α = 90 b = 62.94 β = 90 c = 159.89 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25 18476
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 25 18476 992 100 0.21183 0.20973 0.2095 0.2518 0.2551 RANDOM 52.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 -1.58 3.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.485 r_dihedral_angle_4_deg 17.588 r_dihedral_angle_3_deg 16.167 r_dihedral_angle_1_deg 6.068 r_scangle_it 2.416 r_scbond_it 1.662 r_angle_refined_deg 1.384 r_mcangle_it 1.2 r_mcbond_it 0.699 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.485 r_dihedral_angle_4_deg 17.588 r_dihedral_angle_3_deg 16.167 r_dihedral_angle_1_deg 6.068 r_scangle_it 2.416 r_scbond_it 1.662 r_angle_refined_deg 1.384 r_mcangle_it 1.2 r_mcbond_it 0.699 r_nbtor_refined 0.299 r_metal_ion_refined 0.273 r_symmetry_vdw_refined 0.246 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.099 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1864 Nucleic Acid Atoms Solvent Atoms 94 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement