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Proteinase K by Classical hanging drop method after the first step of high X-Ray dose on ESRF ID23-1 beamline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20mg/ml of protein in 25mM HEPES, pH7.0, reservoir solution composed by 25mM HEPES and 400mM Na/K tartrate at pH7.0. Onto the siliconized glass cover slides were mixed 4 microL of protein solution with 4 microL of reservoir solution., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.847 α = 90 b = 67.847 β = 90 c = 102.482 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 56.614 99.2 0.099 0.099 6.6 4.7 22616
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 98 0.457 0.457 1.6 4.4 3193
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 35.02 22598 1156 98.82 0.184 0.182 0.18 0.218 0.2171 RANDOM 13.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.12 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.502 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 13.858 r_dihedral_angle_1_deg 5.685 r_scangle_it 2.401 r_mcangle_it 1.941 r_scbond_it 1.726 r_angle_refined_deg 1.358 r_mcbond_it 1.218 r_symmetry_hbond_refined 0.451
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.502 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 13.858 r_dihedral_angle_1_deg 5.685 r_scangle_it 2.401 r_mcangle_it 1.941 r_scbond_it 1.726 r_angle_refined_deg 1.358 r_mcbond_it 1.218 r_symmetry_hbond_refined 0.451 r_symmetry_vdw_refined 0.416 r_nbtor_refined 0.315 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.21 r_metal_ion_refined 0.161 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2021 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection