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Proteinase K by Classical hanging drop method before high X-Ray dose on ESRF ID23-1 beamline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 20mg/ml of protein in 25mM HEPES, pH7.0, reservoir solution composed by 25mM HEPES and 400mM Na/K tartrate at pH7.0. Onto the siliconized glass cover slides were mixed 4 microL of protein solution with 4 microL of reservoir solution., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.03 39.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.749 α = 90 b = 67.749 β = 90 c = 102.181 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97625 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.426 56.465 76.4 0.07 0.07 8.4 4 34227
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.43 1.5 19.1 0.245 0.245 3.1 1.4 1199
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.43 43.38 34208 1725 76.03 0.206 0.205 0.229 0.2234 RANDOM 8.288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.401 r_dihedral_angle_3_deg 13.741 r_dihedral_angle_4_deg 13.668 r_dihedral_angle_1_deg 5.497 r_scangle_it 1.558 r_mcangle_it 1.247 r_scbond_it 1.134 r_angle_refined_deg 1.117 r_mcbond_it 0.725 r_symmetry_hbond_refined 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.401 r_dihedral_angle_3_deg 13.741 r_dihedral_angle_4_deg 13.668 r_dihedral_angle_1_deg 5.497 r_scangle_it 1.558 r_mcangle_it 1.247 r_scbond_it 1.134 r_angle_refined_deg 1.117 r_mcbond_it 0.725 r_symmetry_hbond_refined 0.41 r_symmetry_vdw_refined 0.342 r_nbtor_refined 0.318 r_metal_ion_refined 0.311 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2021 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 1
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection