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Prolyl Oligopeptidase with GSK552
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 277 0 .2M NaoAc 4.6, 9% Peg 4000, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.47 50.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.221 α = 90 b = 99.883 β = 90 c = 111.853 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-08-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 50 99.3 0.032 42.6 7.2 113251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.62 99.4 0.064 6.9 11226
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.56 19.92 113121 8217 100 0.149 0.147 0.1604 0.172 0.1827 RANDOM 8.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.17 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.908 r_dihedral_angle_4_deg 12.752 r_dihedral_angle_3_deg 10.957 r_dihedral_angle_1_deg 6.062 r_scangle_it 2.822 r_scbond_it 2.04 r_angle_refined_deg 1.298 r_mcangle_it 1.153 r_angle_other_deg 0.879 r_mcbond_it 0.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.908 r_dihedral_angle_4_deg 12.752 r_dihedral_angle_3_deg 10.957 r_dihedral_angle_1_deg 6.062 r_scangle_it 2.822 r_scbond_it 2.04 r_angle_refined_deg 1.298 r_mcangle_it 1.153 r_angle_other_deg 0.879 r_mcbond_it 0.827 r_symmetry_vdw_other 0.209 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.195 r_nbd_other 0.188 r_nbtor_refined 0.183 r_mcbond_other 0.168 r_symmetry_hbond_refined 0.159 r_chiral_restr 0.135 r_xyhbond_nbd_refined 0.126 r_nbtor_other 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5625 Nucleic Acid Atoms Solvent Atoms 1234 Heterogen Atoms 52
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection