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Crystal structure of A Putative Acetyltransferase (NP_142035.1) from PYROCOCCUS HORIKOSHII at 2.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.8M sodium citrate, 0.3M sodium chloride, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.4 63.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.673 α = 90 b = 113.673 β = 90 c = 70.756 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 29.037 100 0.129 0.129 4.9 7.2 22597 38.144
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 100 0.815 0.815 0.9 7.3 1648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 29.037 22552 1154 99.92 0.171 0.168 0.221 0.2056 RANDOM 31.366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 -1.8 3.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.615 r_dihedral_angle_4_deg 19.683 r_dihedral_angle_3_deg 15.522 r_scangle_it 6.637 r_dihedral_angle_1_deg 6.586 r_scbond_it 5.384 r_mcangle_it 2.894 r_mcbond_it 2.035 r_angle_refined_deg 1.635 r_angle_other_deg 0.957
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.615 r_dihedral_angle_4_deg 19.683 r_dihedral_angle_3_deg 15.522 r_scangle_it 6.637 r_dihedral_angle_1_deg 6.586 r_scbond_it 5.384 r_mcangle_it 2.894 r_mcbond_it 2.035 r_angle_refined_deg 1.635 r_angle_other_deg 0.957 r_mcbond_other 0.473 r_symmetry_vdw_other 0.317 r_nbd_other 0.203 r_nbd_refined 0.199 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.139 r_nbtor_other 0.089 r_chiral_restr 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2253 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction autoSHARP phasing SHELXD phasing