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Glomerella cingulata E600-cutinase complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DCN PDB ENTRY 3DCN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 290 0.1M magnesium acetate, 18% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.37 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.47 α = 90 b = 117.37 β = 103.57 c = 95.24 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic Varimax 2006-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 98 0.122 9.4 2.9 47279 47279 40.345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.74 95.9 0.416 2.3 2.4 6694
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3DCN 2.6 19.8 44886 2391 97.98 0.219 0.215 0.2153 0.279 0.2808 RANDOM 20.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.02 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.183 r_dihedral_angle_4_deg 21.69 r_dihedral_angle_3_deg 19.376 r_dihedral_angle_1_deg 6.931 r_angle_refined_deg 1.477 r_nbtor_refined 0.313 r_nbd_refined 0.231 r_symmetry_hbond_refined 0.225 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.183 r_dihedral_angle_4_deg 21.69 r_dihedral_angle_3_deg 19.376 r_dihedral_angle_1_deg 6.931 r_angle_refined_deg 1.477 r_nbtor_refined 0.313 r_nbd_refined 0.231 r_symmetry_hbond_refined 0.225 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.107 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11428 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection MOSFLM data reduction SCALA data scaling PHASER phasing