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Glomerella cingulata apo cutinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CEX PDB ENTRY 1CEX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 290 28% PEG 4000, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.84 33.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60 α = 90 b = 60 β = 90 c = 86.41 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MAR scanner 345 mm plate Osmic Varimax 2006-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.34 100 0.062 10.7 8.2 13054 13027 22.439
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 100 0.339 5.8 8.1 1858
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CEX 1.9 19.25 11712 11712 1281 99.99 0.196 0.19 0.1895 0.253 0.2519 RANDOM 21.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.709 r_dihedral_angle_4_deg 13.855 r_dihedral_angle_3_deg 13.754 r_dihedral_angle_1_deg 6.031 r_scangle_it 3.965 r_scbond_it 2.834 r_mcangle_it 1.853 r_angle_refined_deg 1.513 r_mcbond_it 1.192 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.709 r_dihedral_angle_4_deg 13.855 r_dihedral_angle_3_deg 13.754 r_dihedral_angle_1_deg 6.031 r_scangle_it 3.965 r_scbond_it 2.834 r_mcangle_it 1.853 r_angle_refined_deg 1.513 r_mcbond_it 1.192 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.202 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1446 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection MOSFLM data reduction SCALA data scaling PHASER phasing