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The Structure of a putative arylesterase from Agrobacterium tumefaciens str. C58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.1M sodium acetate pH 4.6, 3.2M sodium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.95 36.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.204 α = 90 b = 131.397 β = 90 c = 122.332 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2006-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97921, 0.97941 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.088 6.5 7.4 41107 41107 -3 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.6 0.452 6.9 2712
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 34.28 39487 39487 1986 99.6 0.149 0.149 0.148 0.1558 0.184 0.1888 RANDOM 22.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 0.3 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.158 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 12.591 r_dihedral_angle_1_deg 5.322 r_scangle_it 3.439 r_scbond_it 2.409 r_angle_refined_deg 1.386 r_mcangle_it 1.201 r_mcbond_it 1.057 r_angle_other_deg 0.967
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.158 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 12.591 r_dihedral_angle_1_deg 5.322 r_scangle_it 3.439 r_scbond_it 2.409 r_angle_refined_deg 1.386 r_mcangle_it 1.201 r_mcbond_it 1.057 r_angle_other_deg 0.967 r_symmetry_vdw_refined 0.296 r_symmetry_vdw_other 0.246 r_nbd_refined 0.211 r_nbd_other 0.196 r_symmetry_hbond_refined 0.194 r_mcbond_other 0.192 r_metal_ion_refined 0.184 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.137 r_nbtor_other 0.085 r_chiral_restr 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4593 Nucleic Acid Atoms Solvent Atoms 482 Heterogen Atoms 35
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building