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Crystal structure of the Drosophila kinesin family member NOD in complex with ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1 MES, 15% PEG 20000, Se-MET Derivative, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 2 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1 MES, 15% PEG 20000, NATIVE PROTEIN, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.829 α = 90 b = 75.715 β = 90 c = 94.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC TOROIDAL FOCUSING MIRROR 2007-04-07 M MAD 2 1 x-ray CCD ADSC TOROIDAL FOCUSING MIRROR 2007-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.9790, 0.9796, 0.9184 NSLS X6A 2 SYNCHROTRON NSLS BEAMLINE X6A 0.9791 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 19 98.6 0.057 8.2 22.77 4.81 27088 1 -3 30.315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 98.8 0.342 35.4 4.9 4.88 18583
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD, MR THROUGHOUT 1.9 19 27088 1320 97.8 0.227 0.2244 0.255 0.2546 RANDOM 34.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 -7 4.18
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.8 c_improper_angle_d 2.27 c_angle_deg 1.6 c_bond_d 0.006 c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 28
Software Software Software Name Purpose XSCALE data scaling CNS refinement SOLVE phasing RESOLVE phasing PDB_EXTRACT data extraction CNS phasing