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Crystal structure of a putative nadph-dependent oxidoreductase (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.86 293 0.17M sodium acetate, 29.6% polyethylene glycol 4000, 15.0% Glycerol, 0.1M TRIS pH 8.86, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K 2 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.14 277 15.0% Glycerol, 26.7% polyethylene glycol 4000, 0.17M sodium acetate, 0.1M TRIS pH 8.14, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.616 α = 90 b = 104.616 β = 90 c = 173.372 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing 2008-02-17 2 2 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-01-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 0.978791 SSRL BL1-5 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97956 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 2 1.7 29.748 99.9 0.1 0.1 4.6 9.9 120878
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 1.7 1.74 99.3 0.772 0.772 1 3.8 8703
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R 1.7 29.748 120817 120817 6076 100 0.142 0.14 0.1347 0.174 0.1529 RANDOM 29.353
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.074 s_non_zero_chiral_vol 0.051 s_anti_bump_dis_restr 0.043 s_zero_chiral_vol 0.041 s_from_restr_planes 0.029 s_angle_d 0.028 s_bond_d 0.009 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7986 Nucleic Acid Atoms Solvent Atoms 598 Heterogen Atoms 12
Software Software Software Name Purpose SHELXL-97 refinement PHENIX refinement SHELX phasing SHELX refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing MolProbity model building