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Crystal structure of ketosteroid isomerase-like protein (YP_049581.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 2.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 277 2.0000M NaCl, 0.1M Acetate pH 4., NANODROP, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.65 73.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.998 α = 90 b = 135.416 β = 90 c = 139.164 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-03-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97879,0.97932 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.841 98.7 0.078 0.078 6.9 3.7 42374 54.294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 99.8 0.658 0.658 1.2 3.7 3119
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 29.841 42374 2140 98.3 0.184 0.182 0.1873 0.219 0.2197 RANDOM 38.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 0.49 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.878 r_dihedral_angle_3_deg 14.934 r_dihedral_angle_4_deg 14.456 r_dihedral_angle_1_deg 6.489 r_scangle_it 6.057 r_scbond_it 4.256 r_mcangle_it 2.456 r_angle_refined_deg 1.37 r_mcbond_it 1.328 r_angle_other_deg 0.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.878 r_dihedral_angle_3_deg 14.934 r_dihedral_angle_4_deg 14.456 r_dihedral_angle_1_deg 6.489 r_scangle_it 6.057 r_scbond_it 4.256 r_mcangle_it 2.456 r_angle_refined_deg 1.37 r_mcbond_it 1.328 r_angle_other_deg 0.903 r_mcbond_other 0.408 r_symmetry_vdw_refined 0.233 r_xyhbond_nbd_refined 0.224 r_nbd_refined 0.196 r_nbd_other 0.193 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.165 r_metal_ion_refined 0.146 r_nbtor_other 0.084 r_chiral_restr 0.081 r_symmetry_hbond_refined 0.033 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4016 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction