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Thermus thermophilus Uroporphyrinogen III Synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 PEG 8000, MES, MgOAc, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.87 34.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.86 α = 90 b = 63.241 β = 90 c = 90.681 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.0 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 0.1 7.4 16593
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.9 0.689 1627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 16464 833 99.83 0.207 0.204 0.2019 0.259 0.25 RANDOM 28.879
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 1.53 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.133 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 16.786 r_dihedral_angle_1_deg 5.145 r_scangle_it 3.971 r_scbond_it 2.553 r_mcangle_it 1.782 r_angle_refined_deg 1.225 r_mcbond_it 1.057 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.133 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 16.786 r_dihedral_angle_1_deg 5.145 r_scangle_it 3.971 r_scbond_it 2.553 r_mcangle_it 1.782 r_angle_refined_deg 1.225 r_mcbond_it 1.057 r_nbtor_refined 0.304 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.139 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1923 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling