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Crystal structure of acetyltransferase of GNAT family (NP_373092.1) from STAPHYLOCOCCUS AUREUS MU50 at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 24.0% polyethylene glycol 3350, 0.186M calcium acetate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.08 60.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.597 α = 90 b = 135.597 β = 90 c = 103.578 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-04-03 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97867 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.364 100 0.127 0.127 0.137 5.146 7.4 24768 37.319
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.882 0.882 0.948 0.9 7.4 1802
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 28.364 24768 1260 99.93 0.174 0.172 0.1756 0.218 0.2223 RANDOM 35.917
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.52 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.786 r_dihedral_angle_4_deg 15.692 r_dihedral_angle_3_deg 12.981 r_scangle_it 5.993 r_dihedral_angle_1_deg 4.736 r_scbond_it 4.534 r_mcangle_it 2.691 r_mcbond_it 1.874 r_angle_refined_deg 1.445 r_angle_other_deg 0.951
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.786 r_dihedral_angle_4_deg 15.692 r_dihedral_angle_3_deg 12.981 r_scangle_it 5.993 r_dihedral_angle_1_deg 4.736 r_scbond_it 4.534 r_mcangle_it 2.691 r_mcbond_it 1.874 r_angle_refined_deg 1.445 r_angle_other_deg 0.951 r_mcbond_other 0.479 r_symmetry_vdw_other 0.282 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.206 r_nbd_other 0.192 r_symmetry_metal_ion_refined 0.19 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.16 r_symmetry_vdw_refined 0.153 r_chiral_restr 0.091 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2602 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction autoSHARP phasing