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Crystal structure of ORF12 from the lactococcus lactis bacteriophage p2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 0.1M HEPES, 15.9% PEG600, pH6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.79 67.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.318 α = 90 b = 158.318 β = 90 c = 99.524 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 tyroidal mirror 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9785 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 35 99.9 0.092 0.092 29.1 21.4 10739 10739 71.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 100 0.092 0.441 6.4 20 10739
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 30 10218 10218 515 99.98 0.20503 0.20264 0.214 0.25319 0.2531 RANDOM 55.215
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.96 -1.98 -3.96 5.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.087 r_dihedral_angle_4_deg 22.325 r_dihedral_angle_3_deg 21.424 r_dihedral_angle_1_deg 6.777 r_scangle_it 1.81 r_angle_refined_deg 1.591 r_scbond_it 1.196 r_angle_other_deg 0.921 r_mcangle_it 0.769 r_mcbond_it 0.626
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.087 r_dihedral_angle_4_deg 22.325 r_dihedral_angle_3_deg 21.424 r_dihedral_angle_1_deg 6.777 r_scangle_it 1.81 r_angle_refined_deg 1.591 r_scbond_it 1.196 r_angle_other_deg 0.921 r_mcangle_it 0.769 r_mcbond_it 0.626 r_symmetry_hbond_refined 0.316 r_symmetry_vdw_other 0.268 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.204 r_nbtor_refined 0.201 r_nbd_other 0.193 r_xyhbond_nbd_refined 0.154 r_nbtor_other 0.098 r_mcbond_other 0.086 r_chiral_restr 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2211 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing