☰ Navigation Tabs
Crystal structure of the human Fe65-PTB1 domain with bound phosphate (trigonal crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 100mM HEPES, 5% (v/v) ethylene glycol, 50mM Na2HPO4, 10% (w/v) PEG 3350, pH 7.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.39 48.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.04 α = 90 b = 146.04 β = 90 c = 78.294 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 1.00 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 100 0.077 12.9 3.8 17113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.77 100 0.341 3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 49.21 17104 865 99.96 0.245 0.242 0.234 0.313 0.2995 RANDOM 59.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.18 -0.36 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.146 r_dihedral_angle_4_deg 21.697 r_dihedral_angle_3_deg 19.528 r_dihedral_angle_1_deg 7.068 r_scangle_it 3.333 r_scbond_it 1.918 r_angle_refined_deg 1.635 r_mcangle_it 1.632 r_mcbond_it 0.942 r_symmetry_vdw_refined 0.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.146 r_dihedral_angle_4_deg 21.697 r_dihedral_angle_3_deg 19.528 r_dihedral_angle_1_deg 7.068 r_scangle_it 3.333 r_scbond_it 1.918 r_angle_refined_deg 1.635 r_mcangle_it 1.632 r_mcbond_it 0.942 r_symmetry_vdw_refined 0.358 r_nbtor_refined 0.316 r_nbd_refined 0.251 r_xyhbond_nbd_refined 0.188 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3968 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing