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Crystal structure of the human Fe65-PTB1 domain (trigonal crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 100mM HEPES, 5% (v/v) ethylene glycol, 10% (w/v) PEG 3350, pH 7.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.89 α = 90 b = 145.89 β = 90 c = 79.051 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 1.0723 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 72.9 99.8 0.089 14.2 3.6 15431
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.95 99.9 0.347 3.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 25 15409 1535 100 0.246 0.24 0.304 0.3018 RANDOM 59.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.08 -1.54 -3.08 4.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.65 r_dihedral_angle_4_deg 22.587 r_dihedral_angle_3_deg 20.782 r_dihedral_angle_1_deg 6.65 r_scangle_it 4.799 r_scbond_it 2.634 r_mcangle_it 2.108 r_angle_refined_deg 1.776 r_mcbond_it 1.185 r_symmetry_hbond_refined 0.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.65 r_dihedral_angle_4_deg 22.587 r_dihedral_angle_3_deg 20.782 r_dihedral_angle_1_deg 6.65 r_scangle_it 4.799 r_scbond_it 2.634 r_mcangle_it 2.108 r_angle_refined_deg 1.776 r_mcbond_it 1.185 r_symmetry_hbond_refined 0.457 r_nbtor_refined 0.318 r_symmetry_vdw_refined 0.308 r_nbd_refined 0.254 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.119 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3835 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing