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Crystal structure of the human Fe65-PTB1 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 100mM HEPES, 5% (v/v) ethylene glycol, 8% (w/v) PEG 3350, 1mM CH3HgCl, pH 7.5, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.18 43.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.756 α = 90 b = 79.574 β = 90 c = 83.974 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0073 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 83.9 100 0.067 19.2 6.2 15508
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.347 4.6 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 42 15458 782 100 0.204 0.202 0.2012 0.252 0.2 RANDOM 35.469
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 -0.07 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.091 r_dihedral_angle_4_deg 16.294 r_dihedral_angle_3_deg 15.634 r_dihedral_angle_1_deg 6.872 r_scangle_it 3.903 r_scbond_it 2.404 r_mcangle_it 1.848 r_angle_refined_deg 1.445 r_mcbond_it 1.084 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.091 r_dihedral_angle_4_deg 16.294 r_dihedral_angle_3_deg 15.634 r_dihedral_angle_1_deg 6.872 r_scangle_it 3.903 r_scbond_it 2.404 r_mcangle_it 1.848 r_angle_refined_deg 1.445 r_mcbond_it 1.084 r_nbtor_refined 0.296 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2180 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling PHENIX phasing