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Crystal structure of human fidgetin-like protein 1 in complex with ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B9P PDB entry 3B9P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 25% PEG 3350, 0.2M NaCl, 0.1M Bis-Tris, 0.02M ADP, 0.01M MgCl2, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.43 α = 90 b = 85.43 β = 90 c = 197.58 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0000 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 99.3 0.075 0.075 20 7.8 49968 49968
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.6 0.556 0.556 5.2 7.9 6683
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3B9P 2 24.99 47466 47466 2499 100 0.19909 0.19909 0.19713 0.2027 0.23669 0.2396 RANDOM 24.025
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.22 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.886 r_dihedral_angle_3_deg 15.188 r_dihedral_angle_4_deg 14.581 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.524 r_scbond_it 2.171 r_mcangle_it 1.492 r_angle_refined_deg 1.421 r_mcbond_it 0.951 r_angle_other_deg 0.943
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.886 r_dihedral_angle_3_deg 15.188 r_dihedral_angle_4_deg 14.581 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.524 r_scbond_it 2.171 r_mcangle_it 1.492 r_angle_refined_deg 1.421 r_mcbond_it 0.951 r_angle_other_deg 0.943 r_symmetry_vdw_other 0.255 r_nbd_refined 0.211 r_nbd_other 0.197 r_mcbond_other 0.191 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.12 r_chiral_restr 0.085 r_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4314 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MxCuBE data collection XDS data reduction XSCALE data scaling MOLREP phasing