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The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1M Hepes, 0.2M NaCl, 25%PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.72 54.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.948 α = 90 b = 73.948 β = 90 c = 144.488 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2006-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 58.52 97.56 0.097 35 24.7 10480 10224 2 2 48.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 92.32 0.65 1.45 17.3 781
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 58.52 10480 10224 514 97.56 0.20954 0.20748 0.2747 0.25378 0.3079 RANDOM 47.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.56 1.28 2.56 -3.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.046 r_dihedral_angle_3_deg 18.403 r_dihedral_angle_4_deg 12.624 r_dihedral_angle_1_deg 8.411 r_scangle_it 3.453 r_scbond_it 2.397 r_mcangle_it 1.864 r_angle_refined_deg 1.766 r_mcbond_it 1.41 r_angle_other_deg 1.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.046 r_dihedral_angle_3_deg 18.403 r_dihedral_angle_4_deg 12.624 r_dihedral_angle_1_deg 8.411 r_scangle_it 3.453 r_scbond_it 2.397 r_mcangle_it 1.864 r_angle_refined_deg 1.766 r_mcbond_it 1.41 r_angle_other_deg 1.055 r_symmetry_vdw_other 0.257 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.227 r_mcbond_other 0.222 r_nbd_other 0.202 r_nbtor_refined 0.189 r_symmetry_vdw_refined 0.17 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.113 r_nbtor_other 0.098 r_xyhbond_nbd_other 0.027 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1187 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing