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Crystal structure of Campylobacter jejuni FabZ
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GLM pdb entry 2GLM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 288 14% Polyethylene glycol monomethylether 550, 0.2M NaCl, 0.1M BICINE, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.59 52.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.589 α = 90 b = 93.403 β = 90 c = 126.631 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97915 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 80 88.2 0.072 11.7 3.2 29418
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.69 60.5 0.264 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2GLM 2.59 75.16 27907 1490 87.81 0.21823 0.21628 0.2156 0.25361 0.255 RANDOM 56.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.56 -1.36 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.639 r_dihedral_angle_3_deg 21.105 r_dihedral_angle_4_deg 19.47 r_dihedral_angle_1_deg 6.738 r_angle_refined_deg 1.582 r_scangle_it 1.531 r_mcangle_it 1.38 r_mcbond_it 1.128 r_scbond_it 1.073 r_symmetry_hbond_refined 0.421
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.639 r_dihedral_angle_3_deg 21.105 r_dihedral_angle_4_deg 19.47 r_dihedral_angle_1_deg 6.738 r_angle_refined_deg 1.582 r_scangle_it 1.531 r_mcangle_it 1.38 r_mcbond_it 1.128 r_scbond_it 1.073 r_symmetry_hbond_refined 0.421 r_symmetry_vdw_refined 0.383 r_nbtor_refined 0.344 r_nbd_refined 0.273 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6612 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction SCALEPACK data scaling MOLREP phasing