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Crystal structure of human plasma platelet activating factor acetylhydrolase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 293 PH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K, pH 6.60
Crystal Properties Matthews coefficient Solvent content 2.47 49.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.184 α = 90 b = 83.061 β = 115.09 c = 96.705 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 ROSENBAUM-ROCK 2006-03-17 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 315 ROSENBAUM-ROCK 2006-08-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.100 NSLS X29A 2 SYNCHROTRON APS BEAMLINE 19-ID 1.006, 1.009 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 50 96.4 0.057 19.19 3.6 127359 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 75.7 0.283 1.92 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R 1.5 10 121158 6384 91.5 0.142 0.131 0.131 0.133 0.191 0.1755 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 38 6556.52
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.068 s_similar_adp_cmpnt 0.061 s_zero_chiral_vol 0.053 s_anti_bump_dis_restr 0.031 s_from_restr_planes 0.029 s_angle_d 0.027 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6055 Nucleic Acid Atoms Solvent Atoms 511 Heterogen Atoms 126
Software Software Software Name Purpose HKL2Map model building SOLVE phasing RESOLVE model building CCP4 model building ARP/wARP model building SHELXL-97 refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling HKL2Map phasing RESOLVE phasing CCP4 phasing SHELXL-97 phasing