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Glutaredoxin 2 oxidized structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 298 PEG 4000, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.24 45.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.634 α = 90 b = 47.634 β = 90 c = 94.592 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MAR CCD 165 mm 2004-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.431 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 42.56 99.8 0.08 6.3 12.3 7349 7295 21.635
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.16 99.8 0.294 7.8 11.2 7349
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 42.56 7349 7295 340 99.66 0.182 0.18 0.1835 0.219 0.2208 RANDOM 21.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.283 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_1_deg 5.714 r_scangle_it 4.368 r_scbond_it 2.704 r_mcangle_it 1.519 r_angle_refined_deg 1.418 r_mcbond_it 0.906 r_nbtor_refined 0.319 r_nbd_refined 0.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.283 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_1_deg 5.714 r_scangle_it 4.368 r_scbond_it 2.704 r_mcangle_it 1.519 r_angle_refined_deg 1.418 r_mcbond_it 0.906 r_nbtor_refined 0.319 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_refined 0.193 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 806 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection