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Structure of L-Xylulose Reductase with bound coenzyme, phosphate and hydroxide.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG8000, POTASSIUM DIHYDROGENPHOSPHATE, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
Crystal Properties Matthews coefficient Solvent content 2.24 45.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.678 α = 90 b = 87.476 β = 90 c = 72.168 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH Mirrors 2007-12-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 30 98.1 0.0631 12.6 5.04 39016 37468
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.94 0.3394 2.5 5.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 30 36591 1932 98.14 0.20678 0.20403 0.2023 0.25773 0.2551 RANDOM 28.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.93 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.72 r_dihedral_angle_4_deg 19.127 r_dihedral_angle_3_deg 13.147 r_dihedral_angle_1_deg 6.067 r_scangle_it 3.443 r_scbond_it 2.274 r_angle_refined_deg 1.663 r_mcangle_it 1.502 r_mcbond_it 0.94 r_xyhbond_nbd_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.72 r_dihedral_angle_4_deg 19.127 r_dihedral_angle_3_deg 13.147 r_dihedral_angle_1_deg 6.067 r_scangle_it 3.443 r_scbond_it 2.274 r_angle_refined_deg 1.663 r_mcangle_it 1.502 r_mcbond_it 0.94 r_xyhbond_nbd_refined 0.309 r_nbtor_refined 0.293 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.213 r_symmetry_hbond_refined 0.182 r_chiral_restr 0.11 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3663 Nucleic Acid Atoms Solvent Atoms 557 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing