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Complex of GABA(A) receptor-associated protein (GABARAP) with a synthetic peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GNU PDB entry 1GNU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.9 285 30 % (w/v) PEG3350
800 mM NaCl
50 mM MES, pH 5.9, VAPOR DIFFUSION, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.1 41.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.287 α = 90 b = 35.415 β = 100.59 c = 58.209 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 monochromators, mirrors 2006-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 63.5 93.9 0.041 0.041 16.3 2.1 60022 60022 12.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 92.3 0.32 0.32 2.7 2.2 8554
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1GNU 1.3 27.17 60022 60022 3070 93.9 0.178 0.178 0.177 0.1808 0.195 0.199 SHELLS 10.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.19 0.65 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.061 r_dihedral_angle_4_deg 14.17 r_dihedral_angle_3_deg 12.964 r_dihedral_angle_1_deg 6.326 r_scangle_it 2.244 r_scbond_it 1.639 r_angle_refined_deg 1.3 r_mcangle_it 1.013 r_mcbond_it 0.61 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.061 r_dihedral_angle_4_deg 14.17 r_dihedral_angle_3_deg 12.964 r_dihedral_angle_1_deg 6.326 r_scangle_it 2.244 r_scbond_it 1.639 r_angle_refined_deg 1.3 r_mcangle_it 1.013 r_mcbond_it 0.61 r_chiral_restr 0.091 r_gen_planes_refined 0.006 r_bond_refined_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2160 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 11
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction