☰ Navigation Tabs
Main protease of HCoV-HKU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 sodium acetate, pH 6.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.77 α = 90 b = 91.77 β = 90 c = 187.914 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.9998 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 100 99.8 0.11 16 5 108501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 98.1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 50 52904 2654 98.64 0.232 0.229 0.2116 0.285 RANDOM 39.016
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 1.06 -2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.206 r_dihedral_angle_3_deg 19.354 r_dihedral_angle_4_deg 16.687 r_dihedral_angle_1_deg 8.822 r_scangle_it 4.374 r_scbond_it 2.962 r_angle_refined_deg 2.083 r_mcangle_it 1.949 r_mcbond_it 1.198 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.206 r_dihedral_angle_3_deg 19.354 r_dihedral_angle_4_deg 16.687 r_dihedral_angle_1_deg 8.822 r_scangle_it 4.374 r_scbond_it 2.962 r_angle_refined_deg 2.083 r_mcangle_it 1.949 r_mcbond_it 1.198 r_nbtor_refined 0.322 r_symmetry_vdw_refined 0.286 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.135 r_symmetry_hbond_refined 0.127 r_bond_refined_d 0.022 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9363 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling