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Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 1.8 M Ammonium citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.67 53.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.995 α = 90 b = 154.995 β = 90 c = 54.313 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2008-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97949 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 50 98.5 0.089 58.98 6.6 36340 32819 -3 43.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.22 84.2 0.503 2.03 5 714
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.19 33.71 32697 32697 1662 98.16 0.18801 0.18801 0.18532 0.1839 0.23905 0.2369 RANDOM 49.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 -1.53 3.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.131 r_dihedral_angle_4_deg 21.01 r_dihedral_angle_3_deg 16.371 r_dihedral_angle_1_deg 8.539 r_scangle_it 2.659 r_scbond_it 1.788 r_angle_refined_deg 1.459 r_mcangle_it 1.142 r_mcbond_it 0.677 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.131 r_dihedral_angle_4_deg 21.01 r_dihedral_angle_3_deg 16.371 r_dihedral_angle_1_deg 8.539 r_scangle_it 2.659 r_scbond_it 1.788 r_angle_refined_deg 1.459 r_mcangle_it 1.142 r_mcbond_it 0.677 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.208 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4079 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing