☰ Navigation Tabs
Crystal Structure Determination of Goat Hemoglobin at 2.61 Angstrom Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G08 PDB entry 1G08
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 2mM PEG 3350, 1M NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.402 α = 90 b = 67.138 β = 90 c = 153.454 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 2008-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 14.96 0.054 7.6 3.24 18937
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 2 2.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1G08 2.61 14.78 14902 1636 95.49 0.2208 0.2168 0.2105 0.25745 0.2402 RANDOM 27.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.09 r_dihedral_angle_3_deg 15.188 r_dihedral_angle_4_deg 9.295 r_dihedral_angle_1_deg 5.704 r_scangle_it 3.004 r_scbond_it 1.983 r_mcangle_it 1.305 r_angle_refined_deg 1.272 r_mcbond_it 0.921 r_symmetry_vdw_refined 0.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.09 r_dihedral_angle_3_deg 15.188 r_dihedral_angle_4_deg 9.295 r_dihedral_angle_1_deg 5.704 r_scangle_it 3.004 r_scbond_it 1.983 r_mcangle_it 1.305 r_angle_refined_deg 1.272 r_mcbond_it 0.921 r_symmetry_vdw_refined 0.354 r_nbtor_refined 0.298 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.23 r_xyhbond_nbd_refined 0.143 r_metal_ion_refined 0.123 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4389 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement MAR345dtb data collection AUTOMAR data reduction SCALEPACK data scaling AMoRE phasing