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Crystal structure of a conserved metalloprotein from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 294 100mM Tris-HCl pH 8.0, 30% PEG 3350, 200mM Magnesium chloride, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.17 43.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.825 α = 90 b = 136.378 β = 102.84 c = 87.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 47.036 99.6 0.104 0.104 11.5 4.1 75161 75161 36.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 98.2 0.444 0.444 2.7 3.8 10812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 74793 74793 3755 99.23 0.21 0.206 0.268 0.2453 RANDOM 44.453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.56 2.13 -2.02 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.639 r_dihedral_angle_4_deg 19.173 r_dihedral_angle_3_deg 18.844 r_dihedral_angle_1_deg 5.469 r_scangle_it 4.24 r_scbond_it 2.655 r_angle_refined_deg 1.569 r_mcangle_it 1.491 r_mcbond_it 0.763 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.639 r_dihedral_angle_4_deg 19.173 r_dihedral_angle_3_deg 18.844 r_dihedral_angle_1_deg 5.469 r_scangle_it 4.24 r_scbond_it 2.655 r_angle_refined_deg 1.569 r_mcangle_it 1.491 r_mcbond_it 0.763 r_chiral_restr 0.099 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12908 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 12
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection DENZO data reduction SHELXCD phasing SHELXE model building