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Crystal structure of conserved protein of unknown function CA_C3497 from Clostridium acetobutylicum ATCC 824
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 289 3.5M Sodium formate, 0.1M Sodium acetate pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.72 54.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.878 α = 90 b = 52.878 β = 90 c = 112.28 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97920 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 45.79 99.9 0.086 12.1 13.8 27647 27647 19.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.57 100 0.691 3.2 13.4 1343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.53 45.79 26887 26887 1421 99.94 0.166 0.166 0.165 0.1634 0.184 0.1826 RANDOM 23.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.19 0.38 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.234 r_dihedral_angle_3_deg 14.258 r_dihedral_angle_1_deg 6.96 r_scangle_it 4.089 r_scbond_it 2.662 r_dihedral_angle_4_deg 2.092 r_mcangle_it 1.762 r_angle_refined_deg 1.719 r_mcbond_it 1.238 r_symmetry_vdw_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.234 r_dihedral_angle_3_deg 14.258 r_dihedral_angle_1_deg 6.96 r_scangle_it 4.089 r_scbond_it 2.662 r_dihedral_angle_4_deg 2.092 r_mcangle_it 1.762 r_angle_refined_deg 1.719 r_mcbond_it 1.238 r_symmetry_vdw_refined 0.312 r_nbtor_refined 0.309 r_nbd_refined 0.248 r_symmetry_hbond_refined 0.248 r_xyhbond_nbd_refined 0.219 r_chiral_restr 0.126 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1133 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MLPHARE phasing DM phasing SHELXD phasing RESOLVE phasing Coot model building