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Crystal structure of the protein Atu1372 with unknown function from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.1M Bis-tris pH 5.5, 0.2M NH4(OAC), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.25 62.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.623 α = 68.2 b = 93.6 β = 67.87 c = 93.628 γ = 68.14
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-12-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 83.62 97 0.084 20.33 5 274501 266266 2 18.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.745 92.08 0.605 1.5 4 21313
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 46.13 266266 266266 14230 97 0.18066 0.18066 0.17888 0.1845 0.21411 0.2183 RANDOM 18.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.15 -0.21 0.16 -0.24 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.581 r_dihedral_angle_4_deg 18.549 r_dihedral_angle_3_deg 11.48 r_dihedral_angle_1_deg 6.666 r_scangle_it 5.446 r_scbond_it 4.104 r_mcangle_it 2.027 r_mcbond_it 1.633 r_angle_refined_deg 1.447 r_angle_other_deg 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.581 r_dihedral_angle_4_deg 18.549 r_dihedral_angle_3_deg 11.48 r_dihedral_angle_1_deg 6.666 r_scangle_it 5.446 r_scbond_it 4.104 r_mcangle_it 2.027 r_mcbond_it 1.633 r_angle_refined_deg 1.447 r_angle_other_deg 0.925 r_mcbond_other 0.838 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.215 r_nbd_other 0.195 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_other 0.159 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.086 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14016 Nucleic Acid Atoms Solvent Atoms 1074 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing