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Escherichia coli transaldolase b mutant f178y
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ONR PDB ENTRY 1ONR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 18 % PEG 3350, 0.2 M ammonium sulfate, 25 mM glycylglycine, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.48 50.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.864 α = 90 b = 86.173 β = 90 c = 131.191 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 47 92 0.037 0.037 21.4 3.7 135268 135268 10.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 62 0.15 0.15 5.7 2.4 13203
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ONR 1.4 47 128434 128434 6756 91.86 0.15009 0.15009 0.14892 0.149 0.17257 0.1723 RANDOM 9.546
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.4 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.32 r_dihedral_angle_4_deg 12.799 r_dihedral_angle_3_deg 11.039 r_dihedral_angle_1_deg 5.392 r_sphericity_free 4.571 r_scangle_it 3.134 r_scbond_it 2.285 r_sphericity_bonded 1.929 r_mcangle_it 1.255 r_angle_refined_deg 1.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.32 r_dihedral_angle_4_deg 12.799 r_dihedral_angle_3_deg 11.039 r_dihedral_angle_1_deg 5.392 r_sphericity_free 4.571 r_scangle_it 3.134 r_scbond_it 2.285 r_sphericity_bonded 1.929 r_mcangle_it 1.255 r_angle_refined_deg 1.212 r_mcbond_it 1.07 r_rigid_bond_restr 1.051 r_angle_other_deg 0.863 r_mcbond_other 0.331 r_symmetry_vdw_refined 0.314 r_nbd_refined 0.229 r_symmetry_vdw_other 0.21 r_nbd_other 0.188 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.13 r_nbtor_other 0.084 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5116 Nucleic Acid Atoms Solvent Atoms 605 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DNA data collection MOSFLM data reduction SCALA data scaling MOLREP phasing