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Molecular recognition of nitro-fatty acids by PPAR gamma
Crystallization Crystal Properties Matthews coefficient Solvent content 2.69 54.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.043 α = 90 b = 86.197 β = 90 c = 97.35 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD 2005-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 0.9798 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 32973
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 43.11 25965 1346 96.51 0.23572 0.23296 0.2485 0.29002 0.3025 RANDOM 37.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.08 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.11 r_dihedral_angle_3_deg 19.949 r_dihedral_angle_4_deg 18.078 r_dihedral_angle_1_deg 7.059 r_scangle_it 2.925 r_scbond_it 2.03 r_angle_refined_deg 1.764 r_mcangle_it 1.333 r_mcbond_it 0.9 r_symmetry_vdw_refined 0.403
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.11 r_dihedral_angle_3_deg 19.949 r_dihedral_angle_4_deg 18.078 r_dihedral_angle_1_deg 7.059 r_scangle_it 2.925 r_scbond_it 2.03 r_angle_refined_deg 1.764 r_mcangle_it 1.333 r_mcbond_it 0.9 r_symmetry_vdw_refined 0.403 r_nbtor_refined 0.307 r_nbd_refined 0.238 r_xyhbond_nbd_refined 0.199 r_symmetry_hbond_refined 0.199 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4443 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing